Transactions of the Royal Society of Tropical Medicine and Hygiene
Volume 96 , Pages S21-S24 , April 2002

Microsatellite DNA: a tool for population genetic analysis

  • G.C. Barker

      Affiliations

    • Corresponding Author InformationAddress for correspondence: G. C. Barker, Horticulture Research International, Wellesbourne, Warwick, CV35 9EF, UK.

References 

  1. Anderson TJ, Jaenike J. Host specificity, evolutionary relationships and macrogeographic differentiation among Ascaris populations from humans and pigs. Parasitology. 1997;115:325–342
  2. Anderson TJ, Blouin MS, Beech RN. Population biology of parasitic nematodes: applications of genetic markers. Advances in Parasitology. 1998;41:219–283
  3. Anderson TJ, Su XZ, Bockarie M, Lagog M, Day KP. Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples. Parasitology. 1999;119:113–125
  4. Ariey F, Chalvet W, Hommel D, Peneau C, Hulin A, Mercereau-Puijalon O, et al. Plasmodium falciparum parasites in French Guiana: limited genetic diversity and high selfing rate. American Journal of Tropical Medicine and Hygiene. 1999;61:978–985
  5. Armour JAL, Neuman R, Gobert S, Jeffreys AJ. Isolation of human simple repeat loci by hybridization selection. Human Molecular Genetics. 1994;3:599
  6. Barker GC, Bundy DAP. Isolation and characterisation of microsatellites from the human whipworm, Trichuris trichiura. Molecular Ecology. 2000;9:1181–1183
  7. Beveridge I. Allozyme electrophoresis—difficulties encountered in studies on helminths. International Journal for Parasitology. 1998;28:973–979
  8. Blair L, Webster JP, Barker GC. Isolation and characterization of polymorphic microsatellite markers in Schistosoma mansoni from Africa. Molecular Ecology Notes. 2001;1:15
  9. Blouin MS. Mitochondrial DNA diversity in nematodes. Journal of Helminthology. 1998;72:285–289
  10. Blouin MS, Yowell CA, Courtney CH, Dame JB. Host movement and the genetic structure of populations of parasitic nematodes. Genetics. 1995;141:1007–1014
  11. Blouin MS, Yowell CA, Courtney CH, Dame JB. Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics. Molecular Biology and Evolution. 1998;15:1719–1727
  12. Blouin MS, Liu J, Berry RE. Life cycle variation and the genetic structure of nematode populations. Heredity. 1999;83:253–259
  13. Bruford MW, Wayne RK. Microsatellites and their application to population genetic studies. Current Opinions in Genetic Development. 1993;3:939–943
  14. Castagone-Sereno P, Piotte C, Abad P, Bongiovanni M, Dalmasso A. Isolation of a repeated DNA probe showing polymorphism among Meloidgyne incognita populations. Journal of Nematology. 1991;23:343–351
  15. Collins FH, Zheng L, Paskewitz SM, Kafatos FC. Progress in the map-based cloning of the Anopheles gambiae genes responsible for the encapsulation of malarial parasites. Annals of Tropical Medicine and Parasitology. 1997;91:517–521
  16. Davies CM, Webster JP, Kruger O, Munatsi A, Ndamba J, Woolhouse ME. Host-parasite population genetics: a cross-sectional comparison of Bulinus globosus and Schistosoma haematobium. Parasitology. 1999;119:295–302
  17. Dietrich WF, Miller J, Steen R, Merchant MA, Damron BD, Husain Z, et al. A comprehensive genetic map of the mouse genome. Nature. 1996;380:149–152
  18. Fisher MC, Viney ME. Microsatellites of the parasitic nematode Strongyloides ratti. Molecular and Biochemical Parasitology. 1996;80:221–224
  19. Fisher MC, Viney ME. The population genetic structure of the facultatively sexual parasitic nematode Strongyloides ratti in wild rats. In: Proceedings of the Royal Society of London, series B: Biological Sciences. 22:1998;p. 703–709
  20. Gasser RB. PCR-based technology in veterinary parasitology. Veterinary Parasitology. 1999;84:229–258
  21. Hastings IM. Population genetics and the detection of immunogenic and drug-resistant loci in Plasmodium. Parasitology. 1996;112:155–164
  22. Hearne CM, Ghosh S, Todd JA. Microsatellites for linkage analysis of genetic traits. Trends in Genetics. 1992;8:288–294
  23. Herbert PD. Ecological differences between genotypes in a natural population of Daphnia magna. Heredity. 1974;33:327–337
  24. Hoekstra R, Criado-Fornelio A, Fakkeldij J, Bergman J, Roos MH. Microsatellites of the parasitic nematode Haemonchus contenus: polymorphism and linkage with a direct repeat. Molecular and Biochemical Parasitology. 1997;89:97–107
  25. Hoste H, Chilton NB, Gasser RB, Beveridge I. Differences in the second internal transcribed spacer (ribosomal DNA) between five species of Trichostrongylus (Nematoda: Trichostrongylidae). International Journal for Parasitology. 1995;25:75–80
  26. Jarne P, Lagoda JL. Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution. 1996;11:424–429
  27. Keddie EM, Higazi T, Boakye D, Merriweather A, Wooten MC, Unnasch TR. Onchocerca volvulus: limited heterogeneity in the nuclear and mitochondrial genomes. Experimental Parasitology. 1999;93:198–206
  28. Litt M, Luty JA. A hypervariable microsatelllite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. American Journal of Human Genetics. 1989;44:397–401
  29. Lucas CM, Franke ED, Cachay MI, Tejada A, Cruz ME, Kreutzer RD, et al. Geographic distribution and clinical description of leishmaniasis cases in Peru. American Journal of Tropical Medicine and Hygiene. 1998;59:312–317
  30. MacLeod A, Turner CM, Tait A. Detection of single copy gene sequences from single trypanosomes. Molecular and Biochemical Parasitology. 1997;84:267–270
  31. McKeand JB. Molecular diagnosis of parasitic nematodes. Parasitology. 1998;117:S87–S96 supplement
  32. Miles MA, Povoà MM, de Souza AA, Lainson R, Shaw JJ. Some methods for the enzymic characterization of Latin-American Leishmania with particular reference to Leishmania mexicana amazonensis and subspecies of Leishmania hertigi. Transactions of the Royal Society of Tropical Medicine and Hygiene. 1980;74:243–252
  33. Miles MA, Lainson R, Shaw JJ, Povoà M, de Souza AA. Leishmaniais in Brazil: XV. Biochemical distinction of Leishmania mexicana amazonensis, L. braziliensis braziliensis and L. braziliensis guyanensis—aetiological agents of cutaneous leishmaniasis in the Amazon Basin of Brazil. Transactions of the Royal Society of Tropical Medicine and Hygiene. 1981;75:524–529
  34. Nadler SA. Genetic structure of midwestern Ascaris suum populations: a comparison of isoenzyme and RAPD markers. Journal of Parasitology. 1995;81:385–394
  35. Nadler SA. Microevolution and the genetic structure of parasite populations. Journal of Parasitology. 1995;81:395–403
  36. Oliveira RP, Broude NE, Macedo AM, Cantor CR, Smith CL, Pena SD. Probing the genetic population structure of Trypanosoma cruzi with polymorphic microsatellites. In: Proceedings of the National Academy of Sciences of the USA. 95:1998;p. 3776–3780
  37. Rodriguez N, De Lima H, Rodriguez A, Brewster S, Barker DC. Genomic DNA repeat from Leishmania (Viannia) braziliensis (Venezuelan strain) containing simple repeats and microsatellites. Parasitology. 1997;115:349–358
  38. Rossi V, Wincker P, Ravel C, Blaineau C, Pagès M, Bastien P. Structural organisation of microsatellite families in the Leishmania genome and polymorphisms at two (CA)n loci. Molecular and Biochemical Parasitology. 1994;65:271–282
  39. Russell R, Iribar MP, Lambson B, Brewster S, Blackwell JM, Dye C, et al. Intra and inter-specific microsatellite variation in the Leishmania subgenus Viannia. Molecular and Biochemical Parasitology. 1999;103:71–77
  40. Souto RP, Fernandes O, Macedo AM, Campbell DA, Zingales B. DNA markers define two major phylogenetic lineages of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 1996;83:141–152
  41. Su XZ, Wellems TE. Toward a high-resolution Plasmodium falciparum linkage map: polymorphic markers from hundreds of simple sequence repeats. Genomics. 1996;33:430–444
  42. Sunnucks P, De Barro PJ, Lushai G, Maclean N, Hales D. Genetic structure of an aphid studied using microsatellites: cyclic parthenogenesis, differentiated lineages and host specialization. Molecular Ecology. 1997;6:1059–1073
  43. Zarlenga DS, Dame JB. The identification and characterization of a break within the large subunit ribosomal RNA of Trichinella spiralis: comparison of gap sequences within the genus. Molecular and Biochemical Parasitology. 1992;51:281–289
  44. Zarlenga DS, Aschenbrenner RA, Lichtenfels JR. Variations in microsatellite sequences provide evidence for population differences and multiple gene repeats within Trichinella pseudospiralis. Journal of Parasitology. 1996;82:534–538

PII: S0035-9203(02)90047-7

Transactions of the Royal Society of Tropical Medicine and Hygiene
Volume 96 , Pages S21-S24 , April 2002